(i) Scholarly books 

2013 (in press, accepted June 2012) Kontestasi Agama dan Negara: Sejarah Filantropi Islam di Indonesia, Gading, Yogyakarta.

2013 Faith and the State: A History of Islamic Philanthropy in Indonesia, E.J. Brill, Leiden.

2011 Islamization and Public Sphere: Islamic Identity and Negotiating Democracy in Indonesia, with Sukron Kamil, Ridwan Al-Makassary, et al, edited by Winfred Weck, Noorhaidi Hasan, and Irfan Abubakar, Center for the Study of Religion and Culture, Jakarta.

2010 Pandangan Sivitas Akademika UIN Jakarta terhadap Radikalisme Islam, with Sukron Kamil and Sri Hidayati, Lembaga Penelitian UIN Jakarta (The Research Institute), Jakarta.

2010 Benih Islam Radikal di Masjid [Seeds of Radical Islam in Mosques], with Ridwan Al-Makassary, et al, edited by Ridwan Al-Makassary and Irfan Abubakar, Center for the Study of Religion and Culture, Jakarta.

2010 Masjid dan Pembangunan Perdamaian (Mosque and Peace Building), eds with Ridwan Al-Makassary and I. Abubakar, Center for the Study of Religion and Culture, Jakarta.

2006 Filantropi Islam dan Keadilan Sosial (Social Justice Philanthropy), with Andi Agung Prihatna, et al, edited by Chaider S. Bamualim and Irfan Abubakar, Center for the Study of Religion and Culture, Jakarta.

2003 Apakah Islam Agama untuk Perempuan? (Is Islam a Religion for Women?), with Yuniyanti Chuzaifah, Center for Languages and Cultures, Jakarta. 

2003 Philanthropy untuk Keadilan Sosial Menurut Tuntutan Al-Qur?an dan Hadith (Social Justice Philanthropy Revealed in the Qur?an and Hadith), with a team, Center for Languages and Cultures, Jakarta.

2006  Filantropi di Berbagai Tradisi Dunia (Philanthropy in World Traditions), with Dick van Der MMeij, eds, Center for the Study of Religion and Culture, Jakarta.

2004  Baseline Studies and Institutional Analysis Gender Mainstreaming of State Islamic University Jakarta, with Lisa Noor Humaidah, Yuniyanti Chuzaifah and Nooryamin Aini, McGill equity project, Jakarta. 

2003 Konflik Komunal di Indonesia Saat Ini (Communal Conflicts in Contemporary Indonesia), (as team member of Jakarta eds), Series of INIS Publication, Jakarta, Leiden. 

(ii) Scholarly book chapters

Forthcoming (In press, accepted, Jan. 2013) ?Key factors for capacity building of disaster relief operations: Indonesian examples? with Minako Sakai, in Sakai, M. et al. (eds) Agency in Asia Pacific Disaster Relief: Connectivity, Conflict and Community Resilience, Routledge, London.

2008 ?Women, Islam and Philanthropy in Contemporary Indonesia? in Edited by Susan Blackburn et al, Indonesian Islam in a New Era. How Women Negotiate their Muslim Identities. Monash University Press, Melbourne, pp.167-190.

2007 ?Political-Social Movements: Millenarian: Southeast Asia?, in Encyclopedia of Women and Islamic Culture, Vol. VI, E.J. Brill, The Netherlands, pp.71-73.

2006 ?Challenge and Opportunity of Government Based Islamic Philanthropic Organization?, in Chaider S Bamualim, Irfan Abubakar and Cheyne Scott. (eds) Philanthropy and Social Development, Jakarta: Center for the Study of Religion and Culture, 2006, pp.31-60.

2004 ?Darul Islam Movement? in Southeast Asia: A Historical Encyclopedia, edited by Ooi Keat Gin, pp. 401-402. 

2003 Gerakan Modernisme (Modernism Movement) with Kurniati. In Ensiklopedi Tematis Dunia Islam (Islamic Thematic Encyclopedia), Vol.5. Asia Tenggara. Ichtiar Baru Van Hoeve, Jakarta .pp.347-376. 

2003 Struktur Politik Ulama di Indonesia (Political construction of ?ulama in Indonesia) with Rahim, H, Burhanudin, J. In Ensiklopedi Tematis Dunia Islam (Islamic Thematic Encyclopedia). Vol 5 Asia Tenggara, edited by Azyumardi Azra, Jakarta, PT Ichtiar Baru Van Hoeve, pp. 91-103.

2003 Dunia Islam Bagian Timur (Eastern part of the Islamic World), with Hafsin, A, Abdul Hakim, Sudarnoto, in Ensikolpedi Tematis Dunia Islam, Vol 2, Khilafah, edited by Taufik Abdullah. Jakarta, PT Ichtiar Baru van Hoeve, 149-195. 

(iii) Refereed journal articles 

2013 (in-press, accepted, Feb 2013) ?Islamic orientations in contemporary Indonesia: Islamism on the Rise?? with Minako Sakai, Asian Ethnicity.

2012 ?Pandangan Sivitas Akademika UIN Jakarta atas Radikalisme Islam?, Mimbar, Vol 28, No 3, pp. 34-54.

2010 ?Philanthropy, Social Justice and Islamic Tradition?, Alliance, Vol 15, No 4, Dec 2010, pp 31-32.

2010 ?Tukarguling Wakaf: Tinjauan Sosiologis?, jurnal Awqaf, 10-21.

2010 ?Sejarah dan Imaginasi Sejarah? (History and Historical Imagination), Lektur Keagamaan, Vol 8, No 2, pp. 361-372.

2010 ?Religious Giving di Indonesia: Studi Kasus Filantropi Islam?, Dialog, No 69, XXXIII, July 2010, 51-64. 

2007 Perempuan dalam Filantropi Islam (Women in Islamic Philanthropy), journal Galang, Vol 2. No 2, 2007, 54-64.

2004 ?No Money No Worry; Islamic Civil Society in Indonesia has a great Role to Play in Community Development?, In Inside Indonesia, Jan-March 2004, pp. 18-19. 

(iv) Other 

2012 ?Fenomena Masjid di atas Tanah bukan Wakaf: Sebuah Kajian Empiris?, Badan Wakaf Indonesia.

2012 ?The Face of Japan as Seen through Disaster: Tradition Living in Modernisation (Religion and Disaster in Contemporary Japan)?, published online in Japan Foundation Website.